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There are three ways to analyze urine, and your test might use all of them. One is a visual exam, which checks the color and clarity. If your pee has blood in it, it might be red or dark brown. Foam can be a sign of kidney disease, while cloudy urine may mean you have an infection. A microscopic exam checks for things too small to be seen otherwise. Some of the things that shouldn`t be in your urine that a microscope can find include:Red blood cells,White blood cells,Bacteria,Crystals